<?xml version='1.0' encoding='ASCII'?>
<ccp4:ccp4i2 xmlns:ccp4="http://www.ccp4.ac.uk/ccp4ns">
  <ccp4i2_header>
    <function>DEF</function>
    <comment></comment>
    <creationTime>13:33 26/Jul/12</creationTime>
    <userId>cowtan</userId>
    <ccp4iVersion>0.0.1</ccp4iVersion>
    <jobId/>
    <project></project>
    <pluginName>parrot</pluginName>
    <pluginVersion></pluginVersion>
    <pluginTitle>Phase improvement using Parrot</pluginTitle>
    <jobNumber></jobNumber>
  </ccp4i2_header>
  <ccp4i2_body id="parrot">
    <container id="inputData">
      <content id="F_SIGF">
        <className>CObsDataFile</className>
        <qualifiers>
          <mustExist>True</mustExist>
          <fromPreviousJob>True</fromPreviousJob>
          <allowUndefined>False</allowUndefined>
          <requiredContentFlag>4</requiredContentFlag>
        </qualifiers>
      </content>
      <content id="ABCD">
        <className>CPhsDataFile</className>
        <qualifiers>
          <mustExist>True</mustExist>
          <fromPreviousJob>True</fromPreviousJob>
          <allowUndefined>False</allowUndefined>
          <sameCrystalAs>F_SIGF</sameCrystalAs>
        </qualifiers>
      </content>
      <content id="FREERFLAG">
        <className>CFreeRDataFile</className>
        <qualifiers>
          <mustExist>False</mustExist>
          <allowUndefined>True</allowUndefined>
          <fromPreviousJob>False</fromPreviousJob>
          <sameCrystalAs>F_SIGF</sameCrystalAs>
	  <sameCrystalLevel>1</sameCrystalLevel>
        </qualifiers>
      </content>
      <content id="SEQIN">
        <className>CSeqDataFileList</className>
        <qualifiers>
          <listMinLength>1</listMinLength>
          <mustExist>True</mustExist>
          <fromPreviousJob>True</fromPreviousJob>
          <allowUndefined>False</allowUndefined>
          <toolTip>Sequence file for solvent content determination</toolTip>
        </qualifiers>
      </content>
      <content id="F_PHI">
        <className>CMapCoeffsDataFile</className>
        <qualifiers>
          <mustExist>True</mustExist>
          <allowUndefined>True</allowUndefined>
          <fromPreviousJob>False</fromPreviousJob>
        </qualifiers>
      </content>
      <content id="XYZIN_MODE">
        <className>CString</className>
        <qualifiers>
          <onlyEnumerators>True</onlyEnumerators>
          <menuText>No NCS,NCS from heavy atom model,NCS from MR or partial model</menuText>
          <enumerators>no,ha,mr</enumerators>
          <default>no</default>
        </qualifiers>
      </content>
      <content id="XYZIN_HA">
        <className>CPdbDataFile</className>
        <qualifiers>
	  <requiredSubType>4</requiredSubType>
          <fromPreviousJob>True</fromPreviousJob>
        </qualifiers>
      </content>
      <content id="XYZIN_MR">
        <className>CPdbDataFile</className>
         <qualifiers>
	  <!--<requiredSubType>-4,0</requiredSubType> -->
	   <fromPreviousJob>True</fromPreviousJob>
        </qualifiers>
      </content>
    </container>
    <container id="outputData">
      <content id="ABCDOUT">
        <className>CPhsDataFile</className>
        <qualifiers/>
      </content>
      <content id="FPHIOUT">
        <className>CMapCoeffsDataFile</className>
        <qualifiers>
            <default><subType>1</subType><contentFlag>1</contentFlag></default>
            <saveToDb>True</saveToDb>
        </qualifiers>
      </content>
      <content id="PERFORMANCE">
        <className>CExpPhasPerformance</className>
      </content>
    </container>
    <container id="controlParameters">
      <content id="F_SIGF_REF">
        <className>CObsDataFile</className>
        <qualifiers>
          <mustExist>True</mustExist>
          <fromPreviousJob>False</fromPreviousJob>
          <allowUndefined>True</allowUndefined>
          <requiredContentFlag>4</requiredContentFlag>
        </qualifiers>
      </content>
      <content id="ABCD_REF">
        <className>CPhsDataFile</className>
        <qualifiers>
          <mustExist>True</mustExist>
          <fromPreviousJob>False</fromPreviousJob>
          <allowUndefined>True</allowUndefined>
	  <sameCrystalAs>F_SIGF_REF</sameCrystalAs>
        </qualifiers>
      </content>
      <content id="XYZIN_REF">
        <className>CPdbDataFile</className>
        <qualifiers>
          <mustExist>True</mustExist>
          <fromPreviousJob>False</fromPreviousJob>
          <allowUndefined>True</allowUndefined>
        </qualifiers>
      </content>
      <content id="CYCLES">
        <className>CInt</className>
        <qualifiers>
          <menuText>normal (no NCS),normal (with NCS),many (with NCS)</menuText>
          <default>3</default>
          <enumerators>3,10,100</enumerators>
          <allowUndefined>False</allowUndefined>
          <onlyEnumerators>False</onlyEnumerators>
          <min>1</min>
        </qualifiers>
      </content>
      <content id="ANISOTROPY_CORRECTION">
        <className>CBoolean</className>
        <qualifiers>
          <default>True</default>
        </qualifiers>
      </content>
      <content id="RESOLUTION">
        <className>CFloat</className>
        <qualifiers>
          <max>10.0</max>
          <min>1.0</min>
          <allowUndefined>True</allowUndefined>
        </qualifiers>
      </content>
      <content id="SOLVENT_CONTENT">
        <className>CFloat</className>
        <qualifiers>
          <max>1.0</max>
          <min>0.0</min>
          <allowUndefined>True</allowUndefined>
        </qualifiers>
      </content>
      <content id="NCS_MASK_FILTER_RADIUS">
        <className>CFloat</className>
        <qualifiers>
          <default>8.0</default>
          <max>20.0</max>
          <min>5.0</min>
        </qualifiers>
      </content>
      <content id="VERBOSE">
        <className>CInt</className>
        <qualifiers>
          <min>0</min>
        </qualifiers>
      </content>
    </container>
  </ccp4i2_body>
</ccp4:ccp4i2>
