DEF kovoleg 0.0.1 lorestr_i2 09:42 23/Dec/12 Low Resolution Refinement Pipeline CPdbDataFile True True False True 1,0 File containing model coordinates (PDB/mmCIF). CObsDataFile True False True File containing structure factor amplitudes and uncertainties (F/SigF). CFreeRDataFile True True True F_SIGF Free R set corresponding to the reflection data. See the "Generate a Free R set" task in the "Data reduction" section. CTLSDataFile True True True True File specifying TLS groups. If not provided, auto TLS refinement can still be performed (see the "Options" tab). CPdbDataFile True True True False Reference model 2,1,0 2 CList Reference model 0 CPdbDataFile True True False CPdbDataFile 1 True CMapCoeffsDataFile 11 True CMapCoeffsDataFile 2 1 True CRefinementPerformance CCootHistoryDataFile True CTLSDataFile True CString CBoolean True Run BLAST search over PDB database, fetch homologous structures and use them for external restrainst generation CInt 1 1 Number of CPUs for parallel refinement CBoolean False Run 100-200 cycles of jelly body refinement first - useful if your model is straight after molecular replacement CBoolean True Save disk space by removing excessive ProSMART output CInt 3 1 Number of chains for restraints generation (will determine number of refinement protocols to run) CInt 5 1 Maximal number of homologues for analysis CBoolean False Generate restraints for DNA/RNA chains CFloat 3.5 Low-resolution limit for automatically fetched homologues