<?xml version='1.0' encoding='ASCII'?>
<ccp4:ccp4i2 xmlns:ccp4="http://www.ccp4.ac.uk/ccp4ns">
  <ccp4i2_header>
    <function>DEF</function>
    <comment></comment>
    <creationTime>13:33 26/Jul/12</creationTime>
    <userId>cowtan</userId>
    <ccp4iVersion>0.0.1</ccp4iVersion>
    <jobId/>
    <project></project>
    <pluginName>arp_warp_classic</pluginName>
    <pluginVersion></pluginVersion>
    <pluginTitle>Model building using ARP/WARP classic</pluginTitle>
    <jobNumber></jobNumber>
  </ccp4i2_header>
  <ccp4i2_body id="arp_warp_classic">

    <container id="inputData">
      <content id="AWA_FOBS">
        <className>CObsDataFile</className>
        <qualifiers>
          <fromPreviousJob>True</fromPreviousJob>
          <requiredSubType>1</requiredSubType>
          <guiLabel>AWA_FOBS</guiLabel>
          <mustExist>True</mustExist>
          <allowUndefined>False</allowUndefined>
        </qualifiers>
      </content>
      <content id="AWA_FREE">
        <className>CFreeRDataFile</className>
        <qualifiers>
          <fromPreviousJob>True</fromPreviousJob>
          <sameCrystalAs>AWA_FOBS</sameCrystalAs>
	  <sameCrystalLevel>1</sameCrystalLevel>
          <mustExist>False</mustExist>
          <allowUndefined>True</allowUndefined>
        </qualifiers>
      </content>
      <content id="AWA_MODELIN">
        <className>CPdbDataFile</className>
        <qualifiers>
          <fromPreviousJob>True</fromPreviousJob>
          <requiredSubType>1</requiredSubType>
          <default><subType>1</subType></default>
          <mustExist>False</mustExist>
          <allowUndefined>True</allowUndefined>
        </qualifiers>
      </content>
      <content id="AWA_PHINI">
        <className>CPhsDataFile</className>
        <qualifiers>
          <fromPreviousJob>True</fromPreviousJob>
          <sameCrystalAs>AWA_FOBS</sameCrystalAs>
          <requiredContentFlag>2</requiredContentFlag>
          <mustExist>False</mustExist>
          <allowUndefined>True</allowUndefined>
        </qualifiers>
      </content>
      <content id="AWA_HEAVYIN">
        <className>CPdbDataFile</className>
        <qualifiers>
          <fromPreviousJob>True</fromPreviousJob>
          <requiredSubType>4</requiredSubType>
          <default><subType>4</subType></default>
          <guiLabel>Substructure</guiLabel>
          <mustExist>False</mustExist>
          <allowUndefined>True</allowUndefined>
        </qualifiers>
      </content>
      <content id="AWA_PHREF">
        <className>CPhsDataFile</className>
        <qualifiers>
          <fromPreviousJob>True</fromPreviousJob>
          <sameCrystalAs>AWA_FOBS</sameCrystalAs>
          <requiredSubType>1</requiredSubType>
          <mustExist>False</mustExist>
          <allowUndefined>True</allowUndefined>
        </qualifiers>
      </content>
      <content id="AWA_SEQIN">
        <className>CSeqDataFile</className>
        <qualifiers>
          <fromPreviousJob>True</fromPreviousJob>
          <mustExist>False</mustExist>
          <allowUndefined>True</allowUndefined>
        </qualifiers>
      </content>
    </container>

    <container id="outputData">
      <content id="FPHIOUT">
        <className>CMapCoeffsDataFile</className>
        <qualifiers>
          <subType>1</subType>
          <contentFlag>1</contentFlag>
          <!-- <saveToDb>True</saveToDb> -->
        </qualifiers>
      </content>
      <content id="DIFFPHIOUT">
        <className>CMapCoeffsDataFile</className>
        <qualifiers>
          <subType>2</subType>
          <contentFlag>1</contentFlag>
          <!-- <saveToDb>True</saveToDb> -->
        </qualifiers>
      </content>
      <content id="XYZOUT">
        <className>CPdbDataFile</className>
        <qualifiers>
          <subType>1</subType>
          <saveToDb>True</saveToDb>
        </qualifiers>
      </content>
      <content id="XYZDUM">
        <className>CPdbDataFile</className>
        <qualifiers>
          <subType>1</subType>
          <saveToDb>True</saveToDb>
        </qualifiers>
      </content>
      <content id="PERFORMANCE">
        <className>CExpPhasPerformance</className>
        <qualifiers/>
      </content>
    </container>
    <container id="controlParameters">
      <content id="AWA_ARP_MODE">
        <className>CString</className>
        <qualifiers>
          <default>WARPNTRACEPHASES</default>
          <onlyEnumerators>True</onlyEnumerators>
          <enumerators>WARPNTRACEPHASES,WARPNTRACEMODEL,MOLREP</enumerators>
          <menuText>automated model building starting from experimental phases,automated model building starting from existing model,improvement of maps by atoms update and refinement</menuText>
        </qualifiers>
      </content>
      <content id="AWA_REF_MODE">
        <className>CString</className>
        <qualifiers>
          <onlyEnumerators>True</onlyEnumerators>
          <menuText> None  , Phases  , HL coefficients  , Anomalous data  </menuText>
          <enumerators>AWA_REFML,AWA_PHASED,AWA_HL,AWA_SAD</enumerators>
          <default>AWA_REFML</default>
        </qualifiers>
      </content>
      <content id="AWA_SCAT_LAMBDA_AWA_SAD">
        <className>CFloat</className>
        <qualifiers>
          <allowUndefined>True</allowUndefined>
<!--      <min>0.5</min> -->
<!--      <max>4.5</max> -->
          <default>0.992</default>
        </qualifiers>
      </content>
      <content id="AWA_NRES">
        <className>CInt</className>
        <qualifiers>
          <min>1</min>
          <charWidth>4</charWidth>
          <allowUndefined>False</allowUndefined>
        </qualifiers>
      </content>
      <content id="AWA_NMOL">
        <className>CInt</className>
        <qualifiers>
          <min>1</min>
          <default>1</default>
          <charWidth>2</charWidth>
          <allowUndefined>False</allowUndefined>
        </qualifiers>
      </content>
      <content id="AWA_BIG_CYCLES">
        <className>CInt</className>
        <qualifiers>
          <charWidth>3</charWidth>
          <min>1</min>
          <default>10</default>
          <allowUndefined>False</allowUndefined>
        </qualifiers>
      </content>
      <content id="AWA_SMALL_CYCLES">
        <className>CInt</className>
        <qualifiers>
          <min>1</min>
          <charWidth>3</charWidth>
          <default>5</default>
          <allowUndefined>False</allowUndefined>
        </qualifiers>
      </content>
      <content id="AWA_PRESSME">
        <className>CBoolean</className>
        <qualifiers>
          <default>False</default>
        </qualifiers>
      </content>
      <content id="AWA_MOCKYES">
        <className>CBoolean</className>
        <qualifiers>
          <default>False</default>
        </qualifiers>
      </content>
      <content id="AWA_JSRVIEW">
        <className>CBoolean</className>
        <qualifiers>
          <default>False</default>
        </qualifiers>
      </content>
      <content id="AWA_MOCKPAUSE">
        <className>CInt</className>
        <qualifiers>
          <default>35</default>
          <min>0</min>
          <charWidth>4</charWidth>
          <mustExist>True</mustExist>
          <allowUndefined>False</allowUndefined>
        </qualifiers>
      </content>
      <content id="AWA_SEQINSHOW">
        <className>CBoolean</className>
        <qualifiers>
          <default>True</default>
        </qualifiers>
      </content>
      <content id="AWA_EXCLUDE_FREER">
        <className>CString</className>
        <qualifiers>
          <default>N</default>
          <onlyEnumerators>True</onlyEnumerators>
          <enumerators>N,Y</enumerators>
          <menuText>not use,use</menuText>
        </qualifiers>
      </content>
      <content id="AWA_ANO_OPTION">
        <className>CString</className>
        <qualifiers>
          <default>LAMBDA</default>
          <onlyEnumerators>True</onlyEnumerators>
          <enumerators>LAMBDA,MEASURED,CUKA</enumerators>
          <menuText>at specific wavelength,by fluorescence scan data,at CuK-alpha wavelength</menuText>
        </qualifiers>
      </content>
      <content id="AWA_SCAT_ATOM">
        <className>CString</className>
        <qualifiers>
          <default>SE</default>
          <allowUndefined>False</allowUndefined>
        </qualifiers>
      </content>
      <content id="AWA_SCAT_FP_AWA_SAD">
        <className>CFloat</className>
        <qualifiers>
          <default>-7.0</default>
          <allowUndefined>False</allowUndefined>
        </qualifiers>
      </content>
      <content id="AWA_SCAT_FDP_AWA_SAD">
        <className>CFloat</className>
        <qualifiers>
          <default>6.5</default>
          <allowUndefined>False</allowUndefined>
        </qualifiers>
      </content>
      <content id="AWA_USE_COND">
        <className>CBoolean</className>
        <qualifiers>
          <default>True</default>
        </qualifiers>
      </content>
      <content id="AWA_FORCE_COND">
        <className>CBoolean</className>
        <qualifiers>
          <default>0</default>
        </qualifiers>
      </content>
      <content id="AWA_FAKE_DATA">
        <className>CBoolean</className>
        <qualifiers>
          <default>0</default>
        </qualifiers>
      </content>
      <content id="AWA_NCS_RESTRAINTS">
        <className>CBoolean</className>
        <qualifiers>
          <default>True</default>
        </qualifiers>
      </content>
      <content id="AWA_NCS_EXTENSION">
        <className>CBoolean</className>
        <qualifiers>
          <default>True</default>
        </qualifiers>
      </content>
      <content id="AWA_LOOPS">
        <className>CBoolean</className>
        <qualifiers>
          <default>True</default>
        </qualifiers>
      </content>
      <content id="AWA_BUILD_SIDE">
        <className>CBoolean</className>
        <qualifiers>
          <default>True</default>
        </qualifiers>
      </content>
      <content id="AWA_SIDE_AFTER">
        <className>CInt</className>
        <qualifiers>
          <charWidth>2</charWidth>
          <default>0</default>
        </qualifiers>
      </content>
      <content id="AWA_IS_SEMET">
        <className>CBoolean</className>
        <qualifiers>
          <default>0</default>
        </qualifiers>
      </content>
      <content id="AWA_ALBE">
        <className>CBoolean</className>
        <qualifiers>
          <default>0</default>
        </qualifiers>
      </content>
      <content id="AWA_WEIGHTED_FP">
        <className>CBoolean</className>
        <qualifiers>
          <default>0</default>
        </qualifiers>
      </content>
      <content id="AWA_KEEP_MODEL">
        <className>CBoolean</className>
        <qualifiers>
          <default>True</default>
        </qualifiers>
      </content>
      <content id="AWA_SKIP_BUILD">
        <className>CBoolean</className>
        <qualifiers>
          <default>0</default>
        </qualifiers>
      </content>
      <content id="AWA_SKIP_CYCLES">
        <className>CInt</className>
        <qualifiers>
          <charWidth>2</charWidth>
          <min>0</min>
          <default>0</default>
          <allowUndefined>False</allowUndefined>
        </qualifiers>
      </content>
      <content id="AWA_FREEBUILD">
        <className>CBoolean</className>
        <qualifiers>
          <default>0</default>
        </qualifiers>
      </content>
      <content id="AWA_FLATTEN">
        <className>CBoolean</className>
        <qualifiers>
          <default>0</default>
        </qualifiers>
      </content>
      <content id="AWA_RANDTIMES">
        <className>CString</className>
        <qualifiers>
          <default>0</default>
          <onlyEnumerators>True</onlyEnumerators>
          <enumerators>0,1,2,3</enumerators>
          <menuText>Do not randomise,Randomise once,Randomise twice,Randomise three times</menuText>
        </qualifiers>
      </content>
      <content id="AWA_RAND1">
        <className>CInt</className>
        <qualifiers>
          <charWidth>4</charWidth>
          <default>10</default>
        </qualifiers>
      </content>
      <content id="AWA_RANDSHIFT1">
        <className>CFloat</className>
        <qualifiers>
          <charWidth>4</charWidth>
          <default>0.5</default>
        </qualifiers>
      </content>
      <content id="AWA_BCUT1">
        <className>CFloat</className>
        <qualifiers>
          <charWidth>4</charWidth>
          <default>2.0</default>
        </qualifiers>
      </content>
      <content id="AWA_RANDON11">
        <className>CBoolean</className>
        <qualifiers>
          <default>0</default>
        </qualifiers>
      </content>
      <content id="AWA_RAND2">
        <className>CInt</className>
        <qualifiers>
          <charWidth>4</charWidth>
          <default>20</default>
        </qualifiers>
      </content>
      <content id="AWA_RANDSHIFT2">
        <className>CFloat</className>
        <qualifiers>
          <charWidth>4</charWidth>
          <default>0.5</default>
        </qualifiers>
      </content>
      <content id="AWA_BCUT2">
        <className>CFloat</className>
        <qualifiers>
          <charWidth>4</charWidth>
          <default>2.0</default>
        </qualifiers>
      </content>
      <content id="AWA_RANDON22">
        <className>CBoolean</className>
        <qualifiers>
          <default>0</default>
        </qualifiers>
      </content>
      <content id="AWA_RAND3">
        <className>CInt</className>
        <qualifiers>
          <charWidth>4</charWidth>
          <default>30</default>
        </qualifiers>
      </content>
      <content id="AWA_RANDSHIFT3">
        <className>CFloat</className>
        <qualifiers>
          <charWidth>4</charWidth>
          <default>0.5</default>
        </qualifiers>
      </content>
      <content id="AWA_BCUT3">
        <className>CFloat</className>
        <qualifiers>
          <charWidth>4</charWidth>
          <default>2.0</default>
        </qualifiers>
      </content>
      <content id="AWA_RANDON33">
        <className>CBoolean</className>
        <qualifiers>
          <default>0</default>
        </qualifiers>
      </content>
      <content id="AWA_RANDON1">
        <className>CBoolean</className>
        <qualifiers>
          <default>0</default>
        </qualifiers>
      </content>
      <content id="AWA_RANDON2">
        <className>CBoolean</className>
        <qualifiers>
          <default>0</default>
        </qualifiers>
      </content>
      <content id="AWA_RANDON3">
        <className>CBoolean</className>
        <qualifiers>
          <default>0</default>
        </qualifiers>
      </content>
      <content id="AWA_MULTITRACE">
        <className>CInt</className>
        <qualifiers>
          <default>5</default>
        </qualifiers>
      </content>
      <content id="AWA_ADDATOM_SIGMA">
        <className>CFloat</className>
        <qualifiers>
          <default>3.2</default>
        </qualifiers>
      </content>
      <content id="AWA_REMATOM_SIGMA">
        <className>CFloat</className>
        <qualifiers>
          <default>1.0</default>
        </qualifiers>
      </content>
      <content id="AWA_UP_UPDATE">
        <className>CInt</className>
        <qualifiers>
          <default>1</default>
        </qualifiers>
      </content>
      <content id="AWA_CHECK_WILSON">
        <className>CBoolean</className>
        <qualifiers>
          <default>0</default>
        </qualifiers>
      </content>
      <content id="AWA_TWIN">
        <className>CBoolean</className>
        <qualifiers>
          <default>0</default>
        </qualifiers>
      </content>
      <content id="AWA_NCYCLES">
        <className>CInt</className>
        <qualifiers>
          <charWidth>2</charWidth>
          <min>1</min>
          <default>1</default>
          <allowUndefined>False</allowUndefined>
        </qualifiers>
      </content>
      <content id="AWA_PHASE_RESTRAIN">
        <className>CString</className>
        <qualifiers>
          <default>N</default>
          <onlyEnumerators>True</onlyEnumerators>
          <enumerators>N,Y,HL</enumerators>
          <menuText>No,PHIB/FOM,HL</menuText>
        </qualifiers>
      </content>
      <content id="AWA_PHASE_BLUR">
        <className>CFloat</className>
        <qualifiers>
          <default>1.0</default>
        </qualifiers>
      </content>
      <content id="AWA_WEIGHT_MODE">
        <className>CString</className>
        <qualifiers>
          <default>AUTO</default>
          <onlyEnumerators>True</onlyEnumerators>
          <enumerators>AUTO,MANUAL</enumerators>
          <menuText>Automatic,Manual</menuText>
        </qualifiers>
      </content>
      <content id="AWA_WMAT">
        <className>CFloat</className>
        <qualifiers>
          <default>0.5</default>
        </qualifiers>
      </content>
      <content id="AWA_RIDGE_RESTRAINTS">
        <className>CBoolean</className>
        <qualifiers>
          <default>0</default>
        </qualifiers>
      </content>
      <content id="AWA_SCALE">
        <className>CString</className>
        <qualifiers>
          <default>SIMPLE</default>
          <onlyEnumerators>True</onlyEnumerators>
          <enumerators>BULK,SIMPLE</enumerators>
          <menuText>BULK,SIMPLE</menuText>
        </qualifiers>
      </content>
      <content id="AWA_SCANIS">
        <className>CString</className>
        <qualifiers>
          <default>Y</default>
          <onlyEnumerators>True</onlyEnumerators>
          <enumerators>N,Y</enumerators>
          <menuText>isotropic,anisotropic</menuText>
        </qualifiers>
      </content>
      <content id="AWA_REFMAC_REF_SET">
        <className>CString</className>
        <qualifiers>
          <default>N</default>
          <onlyEnumerators>True</onlyEnumerators>
          <enumerators>N,Y</enumerators>
          <menuText>working,free</menuText>
        </qualifiers>
      </content>
      <content id="AWA_SOLVENT">
        <className>CBoolean</className>
        <qualifiers>
          <default>True</default>
        </qualifiers>
      </content>
      <content id="AWA_EXCLUDE_RESOLUTION">
        <className>CBoolean</className>
        <qualifiers>
          <default>0</default>
        </qualifiers>
      </content>
      <content id="AWA_EXCLUDE_RESOLUTION_MIN">
        <className>CFloat</className>
        <qualifiers>
          <default />
        </qualifiers>
      </content>
      <content id="AWA_EXCLUDE_RESOLUTION_MAX">
        <className>CFloat</className>
        <qualifiers>
          <default />
        </qualifiers>
      </content>
      <content id="AWA_KEEP_JUNK">
        <className>CBoolean</className>
        <qualifiers>
          <default>0</default>
        </qualifiers>
      </content>
      <content id="AWA_TOGGLE_COMPTO">
        <className>CBoolean</className>
        <qualifiers>
          <default>0</default>
        </qualifiers>
      </content>
      <content id="AWA_COMPARETO">
        <className>CPdbDataFile</className>
        <qualifiers>
          <guiLabel>PDB for comparison is</guiLabel>
          <default />
        </qualifiers>
      </content>
      <content id="AWA_REMOTE_JOB">
        <className>CBoolean</className>
        <qualifiers>
          <default>0</default>
        </qualifiers>
      </content>
      <content id="AWA_USER_EMAIL">
        <className>CString</className>
        <qualifiers>
          <charWidth>30</charWidth>
          <default />
          <allowUndefined>True</allowUndefined>
        </qualifiers>
      </content>
      <content id="AWA_DATAKEEP_MODE">
        <className>CString</className>
        <qualifiers>
          <default>WORLD</default>
          <onlyEnumerators>True</onlyEnumerators>
          <enumerators>CONFIDENTIAL,WARPTEAM,WORLD</enumerators>
          <menuText>must be kept confidential and deleted after the job is finished,can be archived and made available to ARP/wARP-AutoRickshaw-Refmac developers,can be archived and made available to any software developer that requests them</menuText>
        </qualifiers>
      </content>
      <content id="PERFORMANCE">
        <className>CModelBuildPerformance</className>
        <qualifiers/>
      </content>
    </container>

    <container id="guiParameters">
      <content id="AWA_TOTAL_CYCLES">
        <className>CString</className>
        <qualifiers>
          <allowUndefined>True</allowUndefined>
        </qualifiers>
      </content>
      <content id="AWA_CELL">
        <className>CString</className>
        <qualifiers>
          <allowUndefined>True</allowUndefined>
        </qualifiers>
      </content>
      <content id="AWA_SOLVENTC">
        <className>CString</className>
        <qualifiers>
          <allowUndefined>True</allowUndefined>
        </qualifiers>
      </content>
    </container>

  </ccp4i2_body>
</ccp4:ccp4i2>
