<?xml version='1.0' encoding='ASCII'?>
<ccp4:ccp4i2 xmlns:ccp4="http://www.ccp4.ac.uk/ccp4ns">
    <ccp4i2_header>
        <function>DEF</function>
        <comment/>
        <hostName>mnmacpro.ncl.ac.uk</hostName>
        <userId>martin</userId>
        <ccp4iVersion>0.0.4</ccp4iVersion>
        <pluginName>ProvideAlignment</pluginName>
        <creationTime>11:06 11/Apr/14</creationTime>
        <pluginTitle>Task to bring sequences and alignemnts into the database</pluginTitle>
        <jobNumber/>
    </ccp4i2_header>
    <ccp4i2_body id="ProvideAlignment">
        <container id="controlParameters">
            <content id="PASTEORREAD">
                <className>CString</className>
                <qualifiers>
                    <onlyEnumerators>True</onlyEnumerators>
                    <enumerators>PASTE,ALIGNIN,HHPREDIN,BLASTIN</enumerators>
                    <menuText>Paste an alignment,Read alignment from a file,Read HHPred results,Read Blast (XML) results</menuText>
                    <default>PASTE</default>
                </qualifiers>
            </content>
            <content id="ANNOTATION">
                <className>CString</className>
                <qualifiers>
                  <default>Imported alignment</default>
                </qualifiers>
            </content>
            <content id="SEQUENCETEXT">
                <className>CString</className>
                <qualifiers>
                    <default>>Sequence_1
SEQ-MIGHT-SEEM---THUS
>Sequence_2
-SAME-LENGTH-SEQ-----
                    </default>
                </qualifiers>
            </content>
        </container>
        <container id="inputData">
            <content id="ALIGNIN">
                <className>CSeqAlignDataFile</className>
                <qualifiers>
                    <mustExist>True</mustExist>
                    <allowUndefined>True</allowUndefined>
                    <fromPreviousJob>False</fromPreviousJob>
                </qualifiers>
            </content>
            <content id="HHPREDIN">
                <className>CHhpredDataFile</className>
                <qualifiers>
                    <mustExist>True</mustExist>
                    <allowUndefined>True</allowUndefined>
                    <fromPreviousJob>False</fromPreviousJob>
                </qualifiers>
            </content>
	    <content id="ALI_INDEX">
	      <className>CInt</className>
	      <qualifiers>
		<min>0</min>
		<default>0</default>
	      </qualifiers>
	      </content>
            <content id="BLASTIN">
                <className>CBlastDataFile</className>
                <qualifiers>
                    <mustExist>True</mustExist>
                    <allowUndefined>True</allowUndefined>
                    <fromPreviousJob>False</fromPreviousJob>
                </qualifiers>
            </content>
        </container>
        <container id="outputData">
            <content id="ALIGNMENTFILE">
                <className>CSeqAlignDataFile</className>
                <qualifiers>
                    <baseName>
                        <allowedCharacters>*?</allowedCharacters>
                    </baseName>
                    <relPath>
                        <allowedCharacters>*?</allowedCharacters>
                    </relPath>
                </qualifiers>
            </content>
        </container>
    </ccp4i2_body>
</ccp4:ccp4i2>
