<?xml version="1.0" ?>
<ccp4:ccp4i2 xmlns:ccp4="http://www.ccp4.ac.uk/ccp4ns">
    <ccp4i2_header>
        <function>DEF</function>
        <comment></comment>
        <projectName></projectName>
        <userId>martin</userId>
        <ccp4iVersion>0.0.1</ccp4iVersion>
        <jobId></jobId>
        <pluginName>phaser_simple</pluginName>
        <pluginVersion></pluginVersion>
        <projectId></projectId>
        <creationTime>09:40 23/Dec/12</creationTime>
        <pluginTitle></pluginTitle>
        <jobNumber></jobNumber>
    </ccp4i2_header>
    <ccp4i2_body id="phaser_simple">
        <file>
            <CI2XmlDataFile>
                <project>CCP4I2_TOP</project>
                <relPath>pipelines/phaser_pipeline/script</relPath>
                <baseName>phaser_pipeline.def.xml</baseName>
            </CI2XmlDataFile>
        </file>
        <container id="inputData">
            <content id="RUNREFMAC">
                <className>CBoolean</className>
                <qualifiers>
                    <default>False</default>
                    <guiLabel>Tick if simple REFMAC should be run after phaser</guiLabel>
                </qualifiers>
            </content>
            <content id="COMP_BY">
                <className>CString</className>
                <qualifiers>
                    <enumerators>DEFAULT,MW,ASU</enumerators>
                    <onlyEnumerators>1</onlyEnumerators>
                    <default>MW</default>
                </qualifiers>
            </content>
            <content id="XYZIN">
                <className>CPdbDataFile</className>
                <qualifiers>
                    <mustExist>True</mustExist>
                    <allowUndefined>False</allowUndefined>
                    <fromPreviousJob>True</fromPreviousJob>
                    <guiLabel>Search</guiLabel>
                    <ifAtomSelection>True</ifAtomSelection>
                    <saveToDb>True</saveToDb>
                </qualifiers>
            </content>
            <content id="NCOPIES">
                <className>CInt</className>
                <qualifiers>
                    <min>1</min>
                    <default>1</default>
		    <enumerators>1,2,3,4,5,6,7,8,9,10,11,12,13,14,15,16,17,18,19,20,21,22,23,24</enumerators>
            <enumeratorsOnly>False</enumeratorsOnly>
                </qualifiers>
            </content>
            <content id="ID_RMS">
              <className>CString</className>
              <qualifiers>
                <enumerators>ID,RMS,CARD</enumerators>
                <menuText>sequence identity (in range 0.0-1.0),RMS,read from header of PDB</menuText>
                  <onlyEnumerators>1</onlyEnumerators>
                  <default>ID</default>
              </qualifiers>
            </content>
             <content id="SEARCHSEQUENCEIDENTITY">
                <className>CFloat</className>
                <qualifiers>
                    <min>0.0</min>
                    <max>1.0</max>
                    <default>0.9</default>
                    <allowUndefined>True</allowUndefined>
                </qualifiers>
            </content>
            <content id="SEARCHRMS">
                <className>CFloat</className>
                <qualifiers>
                    <min>0.0</min>
                    <max>10.0</max>
                    <default>1.0</default>
                    <allowUndefined>True</allowUndefined>
                </qualifiers>
            </content>
            <content id="FIXED_ID_RMS">
            <className>CString</className>
            <qualifiers>
              <enumerators>ID,RMS</enumerators>
              <menuText>sequence identity (in range 0.0-1.0),RMS</menuText>
                <onlyEnumerators>1</onlyEnumerators>
                <default>ID</default>
            </qualifiers>
          </content>
          <content id="FIXEDSEQUENCEIDENTITY">
             <className>CFloat</className>
             <qualifiers>
                 <min>0.0</min>
                 <max>1.0</max>
                 <default>0.9</default>
                 <allowUndefined>True</allowUndefined>
             </qualifiers>
         </content>
         <content id="FIXEDRMS">
             <className>CFloat</className>
             <qualifiers>
                 <min>0.0</min>
                 <max>10.0</max>
                 <default>1.0</default>
                 <allowUndefined>True</allowUndefined>
             </qualifiers>
         </content>
            <content id="INPUT_FIXED">
                <className>CBoolean</className>
                <qualifiers>
                    <default>False</default>
                </qualifiers>
            </content>
            <content id="XYZIN_FIXED">
                <className>CPdbDataFile</className>
                <qualifiers>
                    <mustExist>True</mustExist>
                    <allowUndefined>False</allowUndefined>
                    <fromPreviousJob>True</fromPreviousJob>
                    <guiLabel>Fixed</guiLabel>
                </qualifiers>
            </content>
        </container>
    </ccp4i2_body>
</ccp4:ccp4i2>


